Cytoscape Web 1.0.x User Manual

The Cytoscape Web User Manual copyright is owned by The Cytoscape Consortium, and is made available under the same GPL license as Cytoscape itself: LGPL 2.1, the GNU Lesser General Public License, version 2.1, February 1999 available in text at http://www.gnu.org/licenses/lgpl-2.1.html.

© Copyright 2001-2025, The Cytoscape Consortium.

• 1. Introduction
  • 1.1. Software Requirements
• 2. Quick Tour of Cytoscape Web
  • 2.1. The Menu Bar
  • 2.2. Network Management
  • 2.3. Network Viewer
  • 2.4. Tables
• 3. Creating and Saving Networks
  • 3.1. Open Network from NDEx
  • 3.2. Open Workspace from NDEx
  • 3.3. Import Network from File
  • 3.4. Save to NDEx
  • 3.5. Download Network File
• 4. Node and Edge Column Data
  • 4.1. Import Data Table Files
• 5. Styles
  • 5.1. Introduction to the Style Interface
  • 5.2. Styles Tutorial
• 6. Merge Networks
  • 6.1. Merge Networks
• 7. Exporting Your Data
  • 7.1. Exporting Networks as Static Images
• 8. Extending Cytoscape Web
  • 8.1. Apps
  • 8.2. Service Apps
  • 8.3. Community Available Service Apps
  • 8.4. For Developers
• 9. Advanced Features and Troubleshooting
  • 9.1. URL Query Parameters
  • 9.2. Troubleshooting Cytoscape Web
• 10. Cytoscape Web Privacy Policy
  • 10.1. Information and Data
  • 10.2. Rights and Choices
  • 10.3. Feedback